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    Home » Recipes » Healthy Snack Recipes

    Gluten-Free Fudgy Chocolate Muffins

    Modified: Jul 4, 2025 · by Shelby Stover · This post may contain affiliate links · 45 Comments

    Jump to Recipe

    Curb a chocolate craving with these fudgy chocolate muffins. These gooey muffins are soft, moist, and the perfect mid-day snack. Made with cacao powder and chocolate chips these gluten-free muffins make a tasty snack or make-ahead breakfast!

    three muffins on a blue linen with more muffins in a muffin tin behind it

    A healthy alternative to traditional, store-bought muffins, these fudgy chocolate muffins are loaded with fuel.

    Whipped up in just one bowl, as a Certified Nutrition Coach these muffins are a healthy indulgence.

    • Dairy-free, gluten-free, soy-free
    • EASY to make
    • Soft and moist
    • A great after-school snack

    Flavor: Deliciously chocolate! The cacao powder (not cocoa!) and chocolate chips result in the perfect blend of chocolatey goodness.

    Texture: many fudgy chocolate muffins use sour cream to keep them soft and moist. This recipe though is dairy-free (so no full-fat sour cream or melted butter!). However, using steel-cup oats + mini chocolate chips makes it so the muffins come out just as indulgently gooey.

    Ingredients You'll Need

    Banana: overripe bananas help give these gooey, double chocolate muffins their texture and reduce processed sugar.

    Unsweetened applesauce: any applesauce will work but the sweetened version adds a bit too much sugar and less decadent chocolate flavor.

    Steel cut oats: these fudgy chocolate muffins are loaded with fiber and steel cut oats are what provide it! Use up the extra oats from breakfast and take plasure in knowing they're making these muffins as gooey as possible.

    Cacao powder: one part of the double chocolate in this muffins recipe! Learn the difference between cacao powder and cocoa powder and why you'll want to opt for the nutrient perks of cacao powder.

    Dairy-free chocolate chips: you want to choose mini chocolate chips because it evenly distributes the gooey chocolate flavor.

    How To Make Them

    1. In a large bowl mash the banana and mix in the remaining wet ingredients.
    2. One by one mix in the dry ingredients until combined.
    3. Fold in the chocolate chips.
    4. Bake for 25 minutes.

     

    Step By Step Photos

    Mixing bowl with cacao powder bring poured over steel cut oats, almond flour and baking powder.
    Mini chocolate chips in a green measuring cup being poured into a bowl of raw double chocolate chip muffins
    Muffin tin filled with double chocolate chip muffins waiting to be baked
    Gooey chocolate chip muffins in white muffin cups stacked on top of each other

    Crucial Products

    These fudgy chocolate muffins are made from one of my most used ingredients: cacao powder!

    As a Certified Nutrition Coach, cacao powder is literally what makes all of my recipes chocolate-based (and combined with chocolate chips the combo is blissful).

    It’s not that it just makes everything chocolate (though that IS a perk. Who doesn’t love chocolate!?). Cacao powder is also:

    • High in antioxidants
    • Contains a good amount of  calcium
    • High in magnesium

    In a quick summary though this powder is one of the least processed forms of chocolate.

    However, cacao powder and cocoa powder are not the same things. Cacao powder is chocolate in its purest form which means it’s as healthy as can be and cocoa powder is processed. Learn about the differences between cacao and cocoa here.

    And because cacao powder is so nutrient-dense, you’ll want to make sure you buy yours from a quality brand. I personally love Sunfood Cacao Powder. It tastes great and they’re a brand I trust.

    This means..chocolate, when it’s in a pure form is actually very good for you! 

    Important Teaching Tips

    You want to make sure that the steel cut oats are cooked fully prior to using them in the chocolate chip muffins. It's okay if they were flavored a bit (though plain is best) but if they're not cooked it'll alter the texture.

    Any nuts will work in place of the pecans, chop them finely so that they're evenly distributed.

    The double chocolate muffins are soft but do firm up a bit in the fridge. Texture-wise, they're gooey and chewy thanks to the steel cut oats and mini chocolate chips melting throughout.

    Baking powder helps the muffins rise slightly but they're not a "light and fluffy muffins".

    Make sure to bake the gooey muffins in silicone muffin cups as they stick to paper cups.

    Do not freeze the muffins as they'll lose their double chocolate texture!

    Fudgy chocolate muffin on muffin liner with more chocolate muffins on blue linen beside them.

    Fast, crave-worthy snacks that hit your protein goals (without tracking or extra cooking time).

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    Frequently Asked Questions About Double Chocolate Chip Muffins

    What's the secret to making moist muffins?

    The secret to making moist muffins is ensuring your steel-cut oats are cooked but not too dried out and sticky. Those mixed with the mini chocolate chips that melt throughout the batter will keep the double chocolate muffins moist.

    How do you store the gooey chocolate muffins?

    The muffins are best stored in the fridge and can be eaten right out of the fridge or at room temperature. Because they are gooey in nature they do not freeze well.

    Other Recipes You'll Love

    • Protein granola
    • Chocolate chip granola
    • Easy granola bars
    • Make ahead breakfast recipes
    • Peanut butter protein bars
    • Overnight cookie dough protein oats
    • Chocolate chia protein balls
    • Peanut butter and jam protein balls
    • Chocolate fudge protein balls
    • Crunchy granola
    • Sugar-free granola
    • Fudgy protein brownies
    • Chocolate chip granola bars
    • Chocolate protein truffles
    • High protein cookies
    • Easy, no-bake vanilla protein bar
    • Gluten-free pantry staples
    • High protein snack recipes
    three muffins on a blue linen with more muffins in a muffin tin behind it

    Gluten-Free Fudgy Chocolate Muffins

    Shelby Stover
    An easy, double chocolate muffins recipe to help you curb cravings! Made with steel-cup oats and cacao powder these gluten-free muffins make the perfect snack.
    No ratings yet
    Print Recipe Pin Recipe
    Prep Time 5 minutes mins
    Cook Time 25 minutes mins
    Cooling time 30 minutes mins
    Total Time 1 hour hr 30 minutes mins
    Course Snack
    Cuisine American
    Servings 9
    Calories 224 kcal

    Video

    Equipment

    • Muffin pan
    • Silicone muffin cups

    Ingredients
      

    • ½ ripe banana mashed
    • ¼ cup unsweetened applesauce
    • 1 egg
    • ¾ cups steel cut oats cooked and chilled*
    • 1 teaspoon baking powder
    • ½ teaspoon baking soda
    • ½ teaspoon salt
    • ⅓ cup almond flour
    • ¼ cup cacao powder
    • 1 tablespoons maple syrup
    • 1 teaspoon vanilla
    • ⅓ cup pecans chopped
    • ⅓ cup mini chocolate chips dairy free

    Instructions
     

    • Preheat the oven to 350 degrees Farenheit.
    • In a small bowl mash the banana and combine remaining wet ingredients.
    • Slowly add in the dry ingredients and mix well.
      Mixing bowl with cacao powder bring poured over steel cut oats, almond flour and baking powder.
    • Fold in the chocolate chips.
      Mini chocolate chips in a green measuring cup being poured into a bowl of raw double chocolate chip muffins
    • Line a muffin pan with silicone muffin cups and use a trigger ice cream scoop to portion out the chocolate muffins batter into 9 cups.
      Muffin tin filled with double chocolate chip muffins waiting to be baked
    • Bake for 24 minutes.
    • Remove the chocolate muffins from the oven and let cool in the pan for thirty minutes before removing from tray.

    Notes

    • You want to make sure that the steel-cut oats are cooked fully prior to using them in the chocolate muffins. You want most of the liquid to be absorbed.
    • The muffins are soft but do firm up a bit in the fridge. Texture-wise, they're gooey and chewy thanks to the steel-cut oats and chocolate chips.
    • Make sure to bake the gooey muffins in silicone muffin cups as they stick to paper cups.
    • Do not freeze the muffins as they'll lose their double chocolate texture!
    • If you're celiac, double check that your baking powder is completely gluten-free.
    • Grab all the gluten-free pantry staples you need.
    Disclaimer:

    Nutrition values are estimates only, using online calculators. Please verify using your own data"

    Nutrition

    Calories: 224kcalCarbohydrates: 29gProtein: 7gFat: 10gSaturated Fat: 1gSodium: 49mgPotassium: 190mgFiber: 6gSugar: 5gVitamin A: 6IUVitamin C: 1mgCalcium: 61mgIron: 2mg
    Keyword chocolate muffins, dairy-free muffins
    Have You Tried This Recipe?Please leave a star rating and comment below. Mention @fitasamamabear or tag #fitasamamabear!

    If you’re looking for a healthy but delicious muffin- this one’s for you! This chocolate muffin recipe is the perfect blend of healthy indulgence.

    These double chocolate muffins are packed with health benefits but most importantly- chocolate!

    They're perfect on their own as a quick snack or they make a great addition to breakfast. Either way, you get your chocolate fix!

    More Healthy Snack Recipes

    • Peanut butter chocolate buckeyes on top of a parchment paper.
      Protein Buckeyes [Dairy-Free]
    • Squares of coffee fudge on a cutting board.
      Protein Coffee Fudge [Dairy-Free]
    • A stack of frozen yogurt bars.
      Frozen Yogurt Protein Bars [5 ingredients]
    • A bowl of baked banana bread with chocolate chips and sliced bananas on top.
      Single Serve Banana Bread (High Protein)

    Comments

    1. Rebecca @ Strength and Sunshine says

      September 29, 2017 at 9:13 pm

      O, loving all the hearty textures in there!

      Reply
      • fitasamamabear says

        October 01, 2017 at 5:26 pm

        Thanks! It makes them gooey 🙂

        Reply
    2. Eileen says

      September 25, 2017 at 9:47 pm

      These look so good! My grandson would have the time of his life biting into those chocolate oatmeal muffins! I am saving the recipe and making this on the weekend when he visits. The granola bars look great too. My sports loving husband and sons will flip for this. They can take it with them when they go hiking for a quick energy fix.

      Reply
      • fitasamamabear says

        September 26, 2017 at 12:52 am

        Aw so glad you found some recipes you're going to try! My daughter adores the muffins- she's foodie haha As for quick energy fixes, I also have some protein bars and balls coming out that your hubby/sons might like. I'm all about anything you can take with you!

        Reply
    3. Christina | From Under a Palm Tree says

      September 25, 2017 at 3:25 pm

      This recipe looks so yummy! I will definitely have to try these!

      Reply
      • fitasamamabear says

        September 25, 2017 at 8:39 pm

        Thanks, it's a yummy one.. because, well, chocolate!

        Reply
    4. Suzanne Spiegoski says

      September 25, 2017 at 3:00 pm

      These chocolate muffins look and sound really great!

      Reply
      • fitasamamabear says

        September 25, 2017 at 8:39 pm

        Thanks! My daughter loves them 🙂

        Reply
    5. Cori @ Sweet Coralice says

      September 25, 2017 at 12:23 am

      Ooh this looks so, so good! I wish we were neighbors ??

      Reply
      • fitasamamabear says

        September 25, 2017 at 8:44 pm

        Haha my neighbor totally gets bombarded with all my excess stuff!

        Reply
    6. Emily says

      September 24, 2017 at 7:30 pm

      I just need you to live at my house and bake healthy things for us (; (;

      Reply
      • fitasamamabear says

        September 25, 2017 at 4:17 pm

        Haha it's funny because I have said this about SO MANY other people

        Reply
    7. Kurline Altes says

      September 24, 2017 at 5:44 pm

      As I read through this, I literally found myself becoming extremely hungry (all of a sudden). I enjoyed learning about the benefita of using raw cocoa and was excited to know that this ia vegan and gluten free. Can eating muffins get any better? WOW!!!

      Reply
      • fitasamamabear says

        September 25, 2017 at 8:45 pm

        I am obsessed with cacao because I think everything should be chocolate flavored.. and healthy haha 😉

        Reply
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    Welcome!

    I'm Shelby, a Certified Strength & Nutrition Coach who has spent the last 10 years helping women feel more comfortable in their skin though home strength training and healthy food- no diets, no shortcuts

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