Fit as a Mama Bear

menu icon
go to homepage
  • Recipes
  • Protein Challenge
  • Fitness
  • Shop
  • About
  • Subscribe
    • Facebook
    • Instagram
    • Pinterest
  • subscribe
    search icon
    Homepage link
    • Recipes
    • Protein Challenge
    • Fitness
    • Shop
    • About
    • Subscribe
    • Facebook
    • Instagram
    • Pinterest
  • ×
    Home » Recipes » Gluten-Free Dairy-Free Breakfast Recipes

    Gluten-Free Egg Muffins Cups

    Modified: Mar 4, 2026 · by Shelby Stover · This post may contain affiliate links · 20 Comments

    Jump to Recipe Add me as a Trusted Google Source
    Pinterest image with text: two images the top of whole30 egg muffins in a line and the bottom of spinach being whisked into eggs

    Savory, nutrient-dense, and naturally low-carb, these Gluten-Free Egg Muffin Cups are the perfect meal prep breakfast for busy mornings. Dairy-free but lightly cheesy and baked in a muffin tin, they’re easy to grab on your way out the door.

    Dairy-free egg muffins in a line seated on spinach with eggs and spinach in white bowls.

    "I really like the addition of nutritional yeast! Never thought about that for a recipe like this but it sounds genius to me! I am going to try these with unsweetened coconut milk!" -GiGi Eats

    A Quick Look At The Recipe

    • ⏲️Ready In: 55 Minutes
    • 👪Serves: 12 Muffins
    • 🍽 Calories and Protein: 53 kcals and 6 grams of protein
    • 📋Main Ingredients: Eggs, broccoli and spinach, almond milk, nutritional yeast, garlic powder, and turmeric.
    • 📖 Dietary Notes: Dairy-free, gluten-free, keto, paleo, and Whole30.
    • ⭐ Why You'll Love It: These gluten-free keto egg muffins are protein-packed, easy to meal prep, and perfect for busy mornings.

    SUMMARIZE & SAVE THIS CONTENT ON

    ChatGPT
    Google AI
    Perplexity
    Grok

    For busy mornings when cooking isn’t an option, these dairy-free egg muffins make an easy high-protein breakfast you can grab and go. They’re packed with nourishing ingredients and a simple way to start your day with protein, especially if you’re working toward higher protein goals like learning how to eat 100g of protein a day.

    They’re also perfect for meal prep (similar to this carnivore casserole or dairy-free mini quiche) since they freeze and reheat beautifully. I make them often for my kids, so there’s always something nutritious ready in the morning. Need more ideas? The Rise and Chill Breakfast E-Book includes 26 high-protein meal prep breakfasts plus a 5-day quick start guide to help simplify hectic mornings.

    Jump To
    • A Quick Look At The Recipe
    • 💭Why You'll Love This Recipe
    • Ingredients and Substitutions
    • Flavor Variations
    • How To Make Gluten-Free Egg Muffin Cups
    • Important Teaching Tips
    • How To Store and Meal Prep Them
    • Gluten-Free Egg Muffin Cups FAQs
    • More Whole30 Recipes You'll Love
    • Gluten-Free Egg Muffin Cups

    💭Why You'll Love This Recipe

    Easy-to-make: All you need to do is whip everything up in a bowl, portion, and bake these egg muffins to come together.

    Nutritious meal prep: The egg muffin cups can be made in advance and reheated to make mornings a little easier, similar to this dairy-free egg casserole.

    Versatile: With simple swaps, you can vary the flavor of the healthy, gluten-free egg muffin cups to suit your preference, just like this with healthy breakfast hash.

    Ingredients and Substitutions

    Eggs, broccoli, seasonings, spinach, and milk in bowls with text labels over top.

    Most of the ingredients needed are basic kitchen staples or high protein food staples, and you already have them on hand.

    • Egg whites: These have more protein in them than regular eggs so they're a good addition. Make sure to use the cartoned egg whites.
    • Seasoning: All the seasonings can be adjusted to suit your personal preference.
    • Nutritional yeast: all the cheesy flavor without all the cheese! This is one of my dairy-free swaps because it gives a big nutrient bang in just a few tablespoons.
    • Looking for a vegan option? Check out these vegan egg muffins.

    See the recipe card for full information on ingredients and quantities.

    Flavor Variations

    Veggies: Skip the broccoli and add in chopped bell peppers or cauliflower.

    Immune-boosting: Opt to add sliced leek in place of spinach.

    Protein: Add some chopped bacon or gluten-free sausage into the egg mixture for additional protein and savory flavor!

    How To Make Gluten-Free Egg Muffin Cups

    Almond milk being poured from a yellow measuring cup into a mixing bowl of eggs

    Step 1: Whisk together the eggs, egg whites, baking powder, and seasonings.

    Spinach and a whisk in a bowl of raw scrambled eggs

    Step 2: Add in the vegetables and dairy-free milk.

    healthy egg muffins with spinach in red silicone muffin cups in a muffin tray

    Step 3: Portion the egg mixture into a silicone muffin pan (or use liners) and bake them until cooked through.

    Important Teaching Tips

    Either bake the egg muffins in a silicone muffin pan or place silicone liners in a traditional muffin pan. This makes them easier to remove as otherwise they stick to the sides.

    Know that any vegetables will work for the recipe, but chop them finely so that they fully cook and don't create air pockets.

    Serve them alongside a dairy-free yogurt parfait or low calorie baked oats so that you hit your protein goals.

    Don't overcook the egg muffins. Egg muffins become rubbery when they’re cooked too long or at too high a temperature. Bake them just until the centers are set and still slightly soft; they’ll continue to firm up a bit as they cool.

    How To Store and Meal Prep Them

    Store the egg cups in the fridge for 3-4 days in an airtight container.

    To reheat egg muffins: Let them thaw in the fridge if frozen, then cook them in the oven on super low or pop them in the microwave briefly.

    Meal prep them: Pop the muffins out of the molds and turn them sideways. Then, place the entire muffin tin in the freezer for 30 minutes. Remove it and place the muffins into a freezer-safe bag and store them in the freezer for up to 2 months. Doing it this way just ensures they don't stick together as much, and you can remove them one by one to enjoy.

    Gluten-Free Egg Muffin Cups FAQs

    How do you store the egg muffins for meal prep?

    Store gluten-free egg muffins in the freezer in silicone cups (but not in a muffin tin) or between pieces of parchment paper so that they don’t stick together.

    How do you reheat egg muffins?

    You can reheat them in the oven straight from the freezer. Heat them on low (275 degrees Fahrenheit) until heated through.

    Why do my egg muffins go flat?

    Make sure to cook the egg muffins at a lower temperature (300 degrees Fahrenheit), which helps prevent the rise and fall of egg muffins. Another trick is to use a bit of flour in the recipe, though it will void any paleo or Whole30 dietary needs.

    dairy-free egg muffins in a line seated on spinach with eggs and spinach in white bowls

    More Whole30 Recipes You'll Love

    • Sliced avocados stuffed with tuna salad around a glass bowl of tuna salad
      Spicy Tuna Stuffed Avocados [Whole30]
    • hand holding a mason jar with a cherry smoothie topped with cherries, coconut whip and purple straws.
      Dark Chocolate Cherry Smoothie [No Banana}
    • Sausage, green beans, cherry tomatoes, on a sheet pan with sauerkraut beside it.
      Honey Garlic Sausage Sheet Pan Dinner
    • Kimchi spicy deviled eggs lined up with green onions on top and a bowl of kimchi behind them with more eggs on a cutting board.
      Spicy Keto Deviled Eggs [Whole30]

    If you tried this Gluten-Free Egg Muffins Recipe or any other recipe on my blog, please leave a 🌟 star rating and let me know how it goes!

    Dairy-free egg muffins in a line seated on spinach with eggs and spinach in white bowls.

    Gluten-Free Egg Muffin Cups

    Shelby Stover
    Savory in flavor and packed with nutrients these gluten-free egg muffins are a tasty, keto meal prep recipe for busy days.
    5 from 5 votes
    Print Recipe Pin Recipe
    Prep Time 5 minutes mins
    Cook Time 40 minutes mins
    10 minutes mins
    Total Time 55 minutes mins
    Course Breakfast
    Cuisine American
    Servings 12 muffins
    Calories 53 kcal

    Video

    Equipment

    • Silicone muffin cups

    Ingredients
      

    • 6 eggs
    • 1 cup egg whites
    • 2 teaspoon garlic powder
    • 1 teaspoon turmeric
    • ½ teaspoon sea salt
    • 2 tablespoons nutritional yeast
    • ¼ cup almond milk
    • ¼ teaspoon baking powder
    • 1 cup broccoli finely chopped
    • ½ cup spinach chopped

    Instructions
     

    • Preheat the oven to 300 degrees Farenheit.
    • In a large bowl crack the eggs and whisk in the egg whites.
    • Add in the seasonings and baking powder and mix well.
    • Stir in the almond milk.
    • If you haven't already, chop the broccoli and spinach and whisk into the bowl until coated.
    • Prep 12 muffins tins with either non-stick spray or silicone muffin cups in a mufifn tin.
    • Portion the batter into each cup making sure to get an even ration of veggies and eggs.
    • Bake in the oven for twenty minutes then rotate the pan.
    • Bake another 18-20 minutes until cooked through.
    • Remove from the oven and let the egg muffins cool completely in the pan before removing them.

    Notes

    Either bake the egg muffins in a silicone muffin pan or place silicone liners in a traditional muffin pan. This makes them easier to remove as otherwise they stick to the sides.
    Cooking the gluten-free breakfast egg muffins in paper cups makes them hard to peel off when reheating.
    Cooking at a lower temperature and letting them cool in the pan slowly helps it so that they don’t deflate immediately out of the oven.
    Nutrition is broken down per egg muffin. Eat multiple muffins for a protein-based breakfast or add in some chopped chicken or ground beef.
    To reheat the muffins, place them in the oven directly from the freezer at 250 degrees Fahrenheit. Heat until cooked through (about 15 minutes). Heating them too quickly will deflate them.
    Disclaimer:

    Nutrition values are estimates only, using online calculators. Please verify using your own data"

    Nutrition

    Calories: 53kcalCarbohydrates: 2gProtein: 6gFat: 2gSaturated Fat: 1gPolyunsaturated Fat: 0.5gMonounsaturated Fat: 1gTrans Fat: 0.01gCholesterol: 82mgSodium: 172mgPotassium: 137mgFiber: 1gSugar: 0.4gVitamin A: 282IUVitamin C: 7mgCalcium: 29mgIron: 1mg
    Have You Tried This Recipe?Please leave a star rating and comment below. Mention @fitasamamabear or tag #fitasamamabear!

    More Gluten-Free Dairy-Free Breakfast Recipes

    • Small jar with chocolate protein overnight oats topped with chocolate chips and a lid beside it.
      High-Protein Chocolate Overnight Oats [Dairy-Free]
    • Homemade pancake mix in a mason jar.
      Homemade Protein Pancake Mix [Gluten-Free]
    • Baked pumkin oats with chocolate chips in a baking pan, placed on top of a wooden board.
      High Protein Pumpkin Baked Oats [Dairy-Free]
    • Caramel Apple Overnight Oats [High Protein]

    Comments

    1. claudia says

      August 15, 2023 at 8:13 pm

      5 stars
      I've never tried nutritional yeast in anything except on my popcorn, so this was a fantastic surprise! I added some red pepper too it was a great breakfast treat for my busy weekend.

      Reply
      • fitasamamabear says

        August 17, 2023 at 1:52 pm

        I do love it on popcorn too, ah the red pepper would be wonderful!

        Reply
    2. Jane says

      August 15, 2023 at 6:41 pm

      5 stars
      These are so easy to make, and they're delicious! I made these for the first time the other night and my husband and I loved them.

      Reply
      • fitasamamabear says

        August 17, 2023 at 1:52 pm

        Ohh always a hit when hubby approves!

        Reply
    3. Sarah says

      August 15, 2023 at 5:24 pm

      5 stars
      these are so great and so easy for school mornings..i loved the addition of tumeric which really set them apart from other egg muffins ive made.

      Reply
      • fitasamamabear says

        August 17, 2023 at 1:51 pm

        It's a nice little flavor switch!

        Reply
    4. Gina says

      August 15, 2023 at 2:59 pm

      5 stars
      Love the finely chopped veggies in these! Such a great protein packed breakfast and easy to take on the go. Planning to make a batch every Sunday for easy weekday meal prep.

      Reply
      • fitasamamabear says

        August 17, 2023 at 1:51 pm

        It makes busy weeks a little more simple!

        Reply
    5. Mandy Applegate says

      August 15, 2023 at 1:37 pm

      5 stars
      I made these for my nieces who visited at the weekend, apparently, they don't like veggies, even though they devoted a whole batch of these muffins that were stuffed...with veggies!

      Reply
      • fitasamamabear says

        August 17, 2023 at 1:51 pm

        Haha best feeling ever!

        Reply
    6. Carol Little R.H. @studiobotanica says

      June 15, 2018 at 3:08 am

      So love making 'egg muffins' like these. These invite such creativity -- you just know I add bitter greens into mine!
      TASTY!!!

      Reply
      • fitasamamabear says

        June 16, 2018 at 5:57 pm

        Haha I am so jealous of your ability to add bitter greens to everything! You rock.

        Reply
    7. theresa says

      June 15, 2018 at 1:08 am

      I love grab-&-go options like this

      Reply
      • fitasamamabear says

        June 16, 2018 at 5:57 pm

        They keep life simple and sane!

        Reply
    8. Daniela says

      June 14, 2018 at 7:00 pm

      These look delicious! I can absolutely get on board with these and love sneaking the extra veg in there. Win!

      Reply
      • fitasamamabear says

        June 14, 2018 at 7:31 pm

        Egg muffins are one of my favorites! So much healthy in one little cup.

        Reply
    9. Michelle Carnes says

      June 14, 2018 at 5:22 pm

      These look awesome! I love sneaking veggies into everything, we'll definitely be trying these.

      Reply
      • fitasamamabear says

        June 14, 2018 at 7:31 pm

        We are all about the sneaking haha My daughters loved these though so I hope your kids do too!
        !

        Reply
    10. GiGi Eats says

      June 14, 2018 at 1:43 pm

      I really like the addition of nutritional yeast! Never thought about that for a recipe like this but it sounds genius to me! I am going to try these with unsweetened coconut milk!

      Reply
      • fitasamamabear says

        June 14, 2018 at 4:02 pm

        I sneak nutritional yeast into random things a lot haha gives it a little boost so yay! mmm they would b a bit creamier with coconut milk- nice swap!

        Reply
    5 from 5 votes

    Leave a Reply Cancel reply

    Your email address will not be published. Required fields are marked *

    Recipe Rating




    Fit as a Mama Bear profile pic

    Welcome!

    I'm Shelby, a Certified Strength & Nutrition Coach who has spent the last 10 years helping women feel more comfortable in their skin though home strength training and healthy food- no diets, no shortcuts

    More about me

    St. Patricks Day Recipes

    • a green key lime smoothie in a clear jar.
      Key Lime Pie Protein Shake [Dairy-Free]
    • green smoothie bowl with nuts, seeds and berries on top and more topping ingredients behind it in bowls
      Avocado Smoothie Bowl [Whole30]
    • Featured image with text: mango green smoothie in a tumbler glass with spinach leaves around it and an orange linen behind it
      Mango Avocado Smoothie [No Banana]
    • Featured image with text: two glasses with mint green smoothie topped with chocolate chips, fresh mint and blue straws with fresh mint around the glasses
      Mint Chocolate Protein Smoothie [Dairy-Free]

    Trending

    • Two images with text between them top of a woman washing her face and the bottom of beauty products.
      Natural Beauty Routine For Glowing Skin
    • Mini dairy-free egg bites with bell peppers in them on a white plate.
      Dairy-Free Egg Bites [Gluten-Free]
    • Peanut butter chocolate buckeyes on top of a parchment paper.
      Protein Buckeyes [Dairy-Free]
    • A plate of low calorie baked oats with coconut milk cream on top.
      Low Calorie Baked Oats [High Protein, Dairy-Free]
    • Homemade peanut butter in a mason jar topped with peanuts and more peanuts around it.
      No Oil Peanut Butter [2 Ingredients]
    • Squares of coffee fudge on a cutting board.
      Coffee Fudge [High-Protein I Dairy-Free]

    Fitness Tips

    • Woman laying on floor with one knee bent and other in a hamstring stretch.
      5 Best Hamstring Exercises for Runners
    • Woman in blue shorts and tank top running outside.
      Want to Run Better? These 11 Tips Change Everything
    • Woman performing a squat with a pink mini band around her legs.
      36 Mini Band Exercises + A Full Body Workout
    • Woman in piegon pose on a bench for a glute stretch.
      9 Best Glute Stretches
    • Woman in maroon shirt and black pants on her hands and knees performing a glute exercise.
      What Is A Glute Burnout
    • Woman on elbows and knees on a yoga mat performing a mobility drill.
      Full-Body Mobility in Just 5 Minutes with This One Move

    Footer

    ↑ back to top

    About

    • Privacy Policy
    • Disclaimer

    Newsletter

    • Sign Up! for emails and updates

    Contact

    • Contact

    DISCLAIMERS As an Amazon Associate I earn from qualifying purchases.The content on Fit as a Mama Bear is provided for educational and informational purposes only, and is not intended as medical advice. Please consult with a qualified health care professional before acting on any information presented here. Statements on this website have not been evaluated by the Food and Drug Administration. No products mentioned are intended to diagnose, treat, cure or prevent disease.










    Rate This Recipe

    Your vote:




    Let us know what you thought of this recipe:

    This worked exactly as written, thanks!
    My family loved this!
    Thank you for sharing this recipe

    Or write in your own words:

    A rating is required
    A name is required
    An email is required

    Recipe Ratings without Comment

    Something went wrong. Please try again.